go ride the bike.
be sure that the auto tune is enables and that the other ports on the pcv are closed with the plastic plugs.
after you ride connect your laptop, open the program and select "get map". You'll see the changes the autotune made there. You can then accept it if u like it.

 

1. Make sure Auto-Tune is enabled in the Power Commander software.

It's weird if you have the 02 sensor that came with the auto-tune you should still see the AFR i believe.

2. Did you add/make a switch for the auto-tune. You HAVE to make a switch or auto-tune will be running on the basemap instead of auto-tune

 

I dont have a switch, the O2 sensor that came with the kit is in the pipe, which is plugged into the auto tune harness, which is correctly wired into the auto tune box. the power and ground are hooked up correctly. the auto tune box has jumper wire going to the PCV.
I have NO switch hooked up.
And no A/F reading on the PCV screen
I have one of the 2 map files that will actually work with the PCV downloaded into the bike, and was trying to use the auto tune to further tune that map, but i got nothing.

 

Have you enabled autotune in the software?

 

Kind of tricky if you dont know, but try this...

In the ziploc baggy that has all the stuff that came with it there was a short 4inch cable that goes from the Autotune to the PCV. Make sure that is plugged into both...doesnt matter which ports. Now there should be a CAN termination plug as well. Basically this looks like either end of that little cable, but without any cables in it. I believe it basically jumpers the 1st and last pins. You need to plug that into the open port of the Autotune device so that you now have no ports without a plug in it in that device. Turn the bike on with the computer plugged into it and you should then see the AFR numbers flickering around with real numbers other than 0.00 or 9.99.

 

if it is not hooked up correctly you will get a 0.00 reading (which you have)

if it is hooked up correctly but not getting enough power you will get a 9.99 reading.

+1 for making sure the black 'block-off' plugs are connected. it will not work without them

 

there is also a 'block-off' plug that connect to the o2'sensor connection down at the bottom